STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001553435_04107Unannotated protein. (324 aa)    
Predicted Functional Partners:
GCA_001553435_04109
Unannotated protein.
 
 0.998
GCA_001553435_04110
Unannotated protein.
 
 
 0.996
SHXM_04114
Unannotated protein.
 
 
 0.985
SHXM_04113
Unannotated protein.
 
 
 0.980
GCA_001553435_04108
Unannotated protein.
 
  
 0.969
GCA_001553435_04106
Unannotated protein.
 
  
 0.930
rpmB
Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.823
SHXM_01157
Unannotated protein.
  
  
 0.778
GCA_001553435_02376
Unannotated protein.
 
  
 0.759
rpsN
Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.693
Your Current Organism:
Streptomyces hygroscopicus
NCBI taxonomy Id: 68042
Other names: S. hygroscopicus subsp. hygroscopicus, Streptomyces hygroscopicus subsp. hygroscopicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.