SHXM_09538 protein (Streptomyces hygroscopicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHXM_09538

Unannotated protein. (336 aa)

Predicted Functional Partners:

SHXM_07269

0.997

SHXM_03404

0.993

SHXM_09537

0.988

SHXM_09536

0.986

GCA_001553435_04309

0.937

GCA_001553435_05346

0.937

SHXM_02775

0.936

SHXM_02220

0.935

SHXM_02221

0.934

rbsA-2

0.934

Your Current Organism:

Streptomyces hygroscopicus

NCBI taxonomy Id: 68042
Other names: S. hygroscopicus subsp. hygroscopicus, Streptomyces hygroscopicus subsp. hygroscopicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_001553435_04309	GCA_001553435_05346	GCA_001553435_04309	GCA_001553435_05346	Unannotated protein.	Unannotated protein.	0.789
GCA_001553435_04309	SHXM_02775	GCA_001553435_04309	GCA_001553435_06003	Unannotated protein.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.792
GCA_001553435_04309	SHXM_09536	GCA_001553435_04309	GCA_001553435_04713	Unannotated protein.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.782
GCA_001553435_04309	SHXM_09537	GCA_001553435_04309	GCA_001553435_04714	Unannotated protein.	Unannotated protein.	0.949
GCA_001553435_04309	SHXM_09538	GCA_001553435_04309	GCA_001553435_04715	Unannotated protein.	Unannotated protein.	0.937
GCA_001553435_04309	rbsA-2	GCA_001553435_04309	GCA_001553435_06287	Unannotated protein.	Unannotated protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.975
GCA_001553435_05346	GCA_001553435_04309	GCA_001553435_05346	GCA_001553435_04309	Unannotated protein.	Unannotated protein.	0.789
GCA_001553435_05346	SHXM_09537	GCA_001553435_05346	GCA_001553435_04714	Unannotated protein.	Unannotated protein.	0.949
GCA_001553435_05346	SHXM_09538	GCA_001553435_05346	GCA_001553435_04715	Unannotated protein.	Unannotated protein.	0.937
GCA_001553435_05346	rbsA-2	GCA_001553435_05346	GCA_001553435_06287	Unannotated protein.	Unannotated protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.969
SHXM_02220	SHXM_02221	GCA_001553435_00532	GCA_001553435_00533	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.990
SHXM_02220	SHXM_09537	GCA_001553435_00532	GCA_001553435_04714	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.942
SHXM_02220	SHXM_09538	GCA_001553435_00532	GCA_001553435_04715	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.935
SHXM_02220	rbsA-2	GCA_001553435_00532	GCA_001553435_06287	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.972
SHXM_02221	SHXM_02220	GCA_001553435_00533	GCA_001553435_00532	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.990
SHXM_02221	SHXM_09537	GCA_001553435_00533	GCA_001553435_04714	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.941
SHXM_02221	SHXM_09538	GCA_001553435_00533	GCA_001553435_04715	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.934
SHXM_02221	rbsA-2	GCA_001553435_00533	GCA_001553435_06287	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.973
SHXM_02775	GCA_001553435_04309	GCA_001553435_06003	GCA_001553435_04309	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.792
SHXM_02775	SHXM_09537	GCA_001553435_06003	GCA_001553435_04714	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.947