Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHXM_03300 | SHXM_04742 | GCA_001553435_06436 | GCA_001553435_05626 | Unannotated protein. | Unannotated protein. | 0.497 |
SHXM_03300 | SHXM_04748 | GCA_001553435_06436 | GCA_001553435_05632 | Unannotated protein. | Unannotated protein. | 0.684 |
SHXM_03300 | sepF-2 | GCA_001553435_06436 | GCA_001553435_06437 | Unannotated protein. | Unannotated protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.732 |
SHXM_03500 | SHXM_04742 | GCA_001553435_03407 | GCA_001553435_05626 | Unannotated protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. | Unannotated protein. | 0.514 |
SHXM_03500 | SHXM_04748 | GCA_001553435_03407 | GCA_001553435_05632 | Unannotated protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. | Unannotated protein. | 0.506 |
SHXM_04742 | SHXM_03300 | GCA_001553435_05626 | GCA_001553435_06436 | Unannotated protein. | Unannotated protein. | 0.497 |
SHXM_04742 | SHXM_03500 | GCA_001553435_05626 | GCA_001553435_03407 | Unannotated protein. | Unannotated protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. | 0.514 |
SHXM_04742 | SHXM_04743 | GCA_001553435_05626 | GCA_001553435_05627 | Unannotated protein. | Unannotated protein. | 0.602 |
SHXM_04742 | SHXM_04744 | GCA_001553435_05626 | GCA_001553435_05628 | Unannotated protein. | Unannotated protein. | 0.548 |
SHXM_04742 | SHXM_04748 | GCA_001553435_05626 | GCA_001553435_05632 | Unannotated protein. | Unannotated protein. | 0.526 |
SHXM_04742 | SHXM_05497 | GCA_001553435_05626 | GCA_001553435_02205 | Unannotated protein. | Unannotated protein. | 0.538 |
SHXM_04742 | hpf | GCA_001553435_05626 | GCA_001553435_07756 | Unannotated protein. | Unannotated protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.542 |
SHXM_04742 | recF | GCA_001553435_05626 | GCA_001553435_02198 | Unannotated protein. | Unannotated protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.468 |
SHXM_04742 | sepF | GCA_001553435_05626 | GCA_001553435_05589 | Unannotated protein. | Unannotated protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.537 |
SHXM_04742 | sepF-2 | GCA_001553435_05626 | GCA_001553435_06437 | Unannotated protein. | Unannotated protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.498 |
SHXM_04743 | SHXM_04742 | GCA_001553435_05627 | GCA_001553435_05626 | Unannotated protein. | Unannotated protein. | 0.602 |
SHXM_04743 | SHXM_04744 | GCA_001553435_05627 | GCA_001553435_05628 | Unannotated protein. | Unannotated protein. | 0.840 |
SHXM_04743 | SHXM_04748 | GCA_001553435_05627 | GCA_001553435_05632 | Unannotated protein. | Unannotated protein. | 0.555 |
SHXM_04743 | hpf | GCA_001553435_05627 | GCA_001553435_07756 | Unannotated protein. | Unannotated protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.409 |
SHXM_04743 | sepF | GCA_001553435_05627 | GCA_001553435_05589 | Unannotated protein. | Unannotated protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.435 |
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