Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KLR59350.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)    
Predicted Functional Partners:
KLR57460.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.738
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.720
KLR57551.1
Deacylase; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
   
 0.712
KLR59757.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.707
KLR59758.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.707
KLR58317.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.707
KLR57607.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.707
KLR58096.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.685
KLR58062.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.676
lptD
LPS biosynthesis protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
  
 0.666
Your Current Organism:
Diaphorobacter sp. J551
NCBI taxonomy Id: 680496
Other names: D. sp. J5-51, Diaphorobacter sp. J5-51
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