KLR58723.1 protein (Diaphorobacter sp. J551)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

KLR58723.1

Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)

Predicted Functional Partners:

KLR58725.1

0.974

KLR58724.1

0.973

KLR59727.1

0.957

KLR57704.1

0.953

KLR58726.1

0.945

KLR59718.1

0.907

KLR58370.1

0.885

KLR57676.1

0.876

KLR56785.1

0.849

KLR59730.1

0.847

Your Current Organism:

Diaphorobacter sp. J551

NCBI taxonomy Id: 680496
Other names: D. sp. J5-51, Diaphorobacter sp. J5-51

Export your current network:

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same PNG format, but at higher resolution

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... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KLR56785.1	KLR57704.1	OX89_16435	OX89_11025	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
KLR56785.1	KLR58723.1	OX89_16435	OX89_04435	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
KLR56785.1	KLR58724.1	OX89_16435	OX89_04440	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
KLR56785.1	KLR58726.1	OX89_16435	OX89_04450	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
KLR56785.1	KLR59718.1	OX89_16435	OX89_00145	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
KLR56785.1	KLR59727.1	OX89_16435	OX89_00195	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
KLR56785.1	KLR59730.1	OX89_16435	OX89_00210	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
KLR57676.1	KLR57704.1	OX89_11200	OX89_11025	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
KLR57676.1	KLR58370.1	OX89_11200	OX89_08005	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KLR57676.1	KLR58723.1	OX89_11200	OX89_04435	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
KLR57676.1	KLR58724.1	OX89_11200	OX89_04440	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
KLR57676.1	KLR58725.1	OX89_11200	OX89_04445	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
KLR57676.1	KLR58726.1	OX89_11200	OX89_04450	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KLR57676.1	KLR59718.1	OX89_11200	OX89_00145	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
KLR57676.1	KLR59727.1	OX89_11200	OX89_00195	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
KLR57676.1	KLR59730.1	OX89_11200	OX89_00210	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
KLR57704.1	KLR56785.1	OX89_11025	OX89_16435	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
KLR57704.1	KLR57676.1	OX89_11025	OX89_11200	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
KLR57704.1	KLR58370.1	OX89_11025	OX89_08005	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
KLR57704.1	KLR58723.1	OX89_11025	OX89_04435	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953