Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KLR58392.1Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.796
ribB-2
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.752
KLR58192.1
Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.732
KLR56667.1
Sulfate adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.732
KLR58474.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.726
KLR59028.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.698
KLR58478.1
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.662
KLR59727.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.657
KLR59361.1
Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.635
KLR58895.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.628
Your Current Organism:
Diaphorobacter sp. J551
NCBI taxonomy Id: 680496
Other names: D. sp. J5-51, Diaphorobacter sp. J5-51
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