Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KLR58393.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (564 aa)    
Predicted Functional Partners:
KLR59727.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.909
KLR59396.1
RNA polymerase subunit sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.828
KLR57704.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.755
KLR58372.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.701
ribB-2
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.699
KLR58276.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.589
KLR59028.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.585
KLR58394.1
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.571
pyrL
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.557
KLR59348.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.549
Your Current Organism:
Diaphorobacter sp. J551
NCBI taxonomy Id: 680496
Other names: D. sp. J5-51, Diaphorobacter sp. J5-51
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