STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PJIAN_112Hypothetical protein. (256 aa)    
Predicted Functional Partners:
PJIAN_111
Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.824
PJIAN_398
Outer membrane protein insertion porin family.
  
     0.728
GAT62110.1
LPS assembly outer membrane protein LptD.
  
     0.707
GAT64205.1
RNA polymerase Rpb6.
 
     0.679
GAT63245.1
Lipopolysaccharide export system permease protein.
  
     0.676
GAT61761.1
Hypothetical protein.
  
     0.665
GAT62191.1
Tetratricopeptide repeat-containing protein.
  
     0.659
GAT62585.1
Hypothetical protein.
  
     0.628
GAT61895.1
Signal peptidase I.
  
     0.609
GAT61844.1
Membrane protein YfhO.
  
     0.585
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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