STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT61552.1Lrp/AsnC family transcriptional regulator. (154 aa)    
Predicted Functional Partners:
GAT61910.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.795
GAT61594.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.709
GAT62557.1
RHH-type transcriptional regulator; Belongs to the aldehyde dehydrogenase family.
  
 
 0.572
GAT61551.1
Y_Y_Y domain-containing protein.
    
  0.469
GAT61553.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
       0.458
GAT61947.1
Acetolactate synthase-1/2/3 large subunit.
   
 
 0.430
PJIAN_254
2-oxoisovalerate dehydrogenase E1 component.
    
 0.422
PJIAN_488
2-oxoisovalerate dehydrogenase E1 component.
    
 0.422
GAT61589.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.411
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.