STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PJIAN_149L-rhamnose-H+ transport protein. (342 aa)    
Predicted Functional Partners:
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
  
 0.761
PJIAN_148
Rhamnulokinase.
 
  
 0.732
GAT62228.1
Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family.
 
     0.656
PJIAN_158
Glycosyl hydrolases family 2.
 
     0.638
PJIAN_147
Hypothetical protein.
       0.619
PJIAN_151
AraC-type DNA-binding protein.
 
    0.585
GAT62341.1
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
   
 0.529
GAT61822.1
Predicted arabinose efflux permease, MFS family.
  
    0.514
GAT62169.1
Glucose uptake protein.
  
     0.500
GAT62230.1
alpha-L-rhamnosidase.
  
     0.495
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.