STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PJIAN_1872-aminoadipate transaminase. (395 aa)    
Predicted Functional Partners:
trpF
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
   
 
 0.800
GAT62557.1
RHH-type transcriptional regulator; Belongs to the aldehyde dehydrogenase family.
  
 
 0.535
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
   
 
 0.443
GAT62956.1
4Fe-4S binding domain-containing protein.
    
   0.440
GAT64105.1
Non-ribosomal peptide synthetase terminal domain of unknown function; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.431
GAT64162.1
Dihydroorotase.
   
  0.428
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
   
 
 0.420
GAT64317.1
Chorismate mutase.
     
 0.420
GAT64318.1
Prephenate dehydrogenase.
     
 0.418
GAT62178.1
Shikimate dehydrogenase.
   
 
 0.414
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.