STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PJIAN_190Glycosyltransferase. (372 aa)    
Predicted Functional Partners:
PJIAN_189
Membrane protein.
  
    0.806
PJIAN_191
UDP-galactopyranose mutase.
  
 
  0.771
PJIAN_192
Hypothetical protein.
  
 
  0.673
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.648
PJIAN_193
Rhamnosyltransferase.
  
    0.526
GAT62294.1
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase.
  
 0.458
GAT62295.1
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
  
 0.458
PJIAN_116
1,4-alpha-glucan branching enzyme.
   
  0.437
GAT63695.1
Por secretion system C-terminal sorting domain-containing protein.
   
  0.437
GAT64147.1
ADP-heptose:LPS heptosyltransferase.
 
 
 0.434
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.