STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT62355.1Hypothetical protein. (394 aa)    
Predicted Functional Partners:
GAT62357.1
Outer membrane protein, YaiO family.
 
     0.934
GAT62354.1
Glycosyltransferase.
 
     0.924
GAT62356.1
Response regulator receiver domain-containing protein.
 
     0.810
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.789
GAT61910.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.767
PJIAN_254
2-oxoisovalerate dehydrogenase E1 component.
   
 
  0.753
PJIAN_488
2-oxoisovalerate dehydrogenase E1 component.
   
 
  0.753
GAT61594.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 
  0.726
GAT61719.1
Glucokinase.
  
  
  0.603
GAT63968.1
Alpha-ribazole phosphatase.
  
  
  0.580
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.