STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT62359.1ATP-dependent exoDNAse (exonuclease V) beta subunit. (1081 aa)    
Predicted Functional Partners:
GAT61917.1
PD-(D/E)XK nuclease superfamily protein.
 
 
 0.991
GAT63825.1
UvrD-like helicase C-terminal domain-containing protein.
  
 0.815
PJIAN_380
Exodeoxyribonuclease-5.
 
 
 0.771
GAT62323.1
DNA helicase-2.
  
 
 0.635
PJIAN_265
Hypothetical protein.
  
     0.590
GAT62831.1
Lipopolysaccharide-assembly.
  
     0.576
GAT63881.1
Hypothetical protein.
  
     0.525
GAT63346.1
Hypothetical protein.
  
     0.519
GAT63615.1
3'-5' exonuclease.
  
     0.504
GAT63266.1
Hypothetical protein.
  
     0.467
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.