STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT62664.1Hypothetical protein. (384 aa)    
Predicted Functional Partners:
GAT62663.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.810
GAT62662.1
Hypothetical protein.
       0.773
GAT62665.1
Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family.
       0.526
PJIAN_397
Outer membrane protein.
  
     0.450
GAT61604.1
Response regulator receiver domain-containing protein.
  
     0.439
GAT62139.1
UDP-2,3-diacylglucosamine hydrolase.
  
    0.439
GAT61761.1
Hypothetical protein.
 
     0.437
GAT64204.1
Outer membrane protein assembly factor BamD.
  
     0.430
PJIAN_398
Outer membrane protein insertion porin family.
  
     0.418
GAT62117.1
Type I phosphodiesterase.
  
   0.417
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.