STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PJIAN_252Rhamnose utilisation protein RhaD. (654 aa)    
Predicted Functional Partners:
PJIAN_254
2-oxoisovalerate dehydrogenase E1 component.
 
 0.956
PJIAN_249
L-fuculose-phosphate aldolase.
 
 
 0.918
PJIAN_253
Hypothetical protein.
 
     0.899
GAT61910.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 0.870
PJIAN_148
Rhamnulokinase.
 
 
 0.860
PJIAN_250
Threonine dehydrogenase.
 
 
 0.857
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.854
araB
L-ribulokinase.
 
  
 0.838
GAT62575.1
Xylulokinase.
  
 
 0.831
GAT61821.1
D-lactate dehydrogenase.
  
 0.820
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.