STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PJIAN_2612-dehydro-3-deoxyphosphogluconate aldolase. (222 aa)    
Predicted Functional Partners:
PJIAN_260
2-dehydro-3-deoxygluconokinase.
 
 
 0.968
GAT62164.1
2-dehydro-3-deoxygluconokinase.
 
 
 0.935
PJIAN_254
2-oxoisovalerate dehydrogenase E1 component.
    
 0.831
GAT61821.1
D-lactate dehydrogenase.
   
 
 0.810
PJIAN_488
2-oxoisovalerate dehydrogenase E1 component.
     
 0.807
GAT62147.1
D-lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.804
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.767
PJIAN_262
MFS transporter, ACS family.
 
   
 0.759
GAT63603.1
Lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.728
uxaC
Glucuronate isomerase.
 
   
 0.719
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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