STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PJIAN_282DNA-binding response regulator, LytR/AlgR family. (238 aa)    
Predicted Functional Partners:
PJIAN_281
Histidine kinase.
 
  0.954
GAT62126.1
Histidine kinase.
 
  0.847
PJIAN_457
Histidine kinase.
 
  0.847
PJIAN_316
Histidine kinase.
  
  0.842
GAT63359.1
Histidine kinase.
  
  0.842
GAT63596.1
Histidine kinase.
  
  0.842
GAT63459.1
Two component regulator propeller.
    
 0.764
GAT63628.1
Two component regulator propeller.
    
 0.764
GAT64272.1
Signal transduction histidine kinase.
    
 0.764
GAT63436.1
AraC-type DNA-binding protein.
    
 0.727
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.