STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT62878.1Glycosyl transferase family 2. (337 aa)    
Predicted Functional Partners:
GAT62874.1
Glycosyltransferase.
 
    
0.800
GAT62879.1
Glycosyltransferase.
 
    0.758
GAT62872.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.735
GAT62877.1
Hypothetical protein.
  
    0.731
GAT62870.1
Hypothetical protein.
  
    0.728
GAT62871.1
WxcM-like, C-terminal protein.
  
    0.721
GAT62873.1
Hypothetical protein.
       0.718
GAT62875.1
peptidoglycan/LPS O-acetylase OafA/YrhL.
       0.718
GAT62876.1
Hypothetical protein.
       0.718
GAT62868.1
Asparagine synthase.
  
    0.678
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.