STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT62885.1Outer membrane receptor proteins. (808 aa)    
Predicted Functional Partners:
PJIAN_263
Hypothetical protein.
 
     0.779
PJIAN_410
Hypothetical protein.
  
     0.774
GAT63901.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.770
GAT61700.1
Tetratricopeptide repeat-containing protein.
  
     0.769
GAT63890.1
Hypothetical protein.
  
     0.769
GAT63741.1
Peptidase family C25.
  
     0.764
GAT61640.1
Hypothetical protein.
  
     0.758
GAT62637.1
Cell surface protein SprA.
  
     0.757
GAT63742.1
Hypothetical protein.
  
     0.752
GAT63829.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.736
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.