STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT63048.1Hypothetical protein. (191 aa)    
Predicted Functional Partners:
GAT62651.1
Ribose 5-phosphate isomerase B.
  
 
 0.804
GAT62004.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
   
 
 0.795
GAT61823.1
Poly-beta-1,6 N-acetyl-D-glucosamine synthase.
    
 0.728
GAT61719.1
Glucokinase.
  
 
 0.660
GAT62916.1
Cellobiose phosphorylase.
    
 0.633
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.630
GAT62447.1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
 0.623
GAT63049.1
Hypothetical protein.
       0.603
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.596
GAT63968.1
Alpha-ribazole phosphatase.
 
  
 0.593
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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