STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT63064.1TonB-linked outer membrane protein, SusC/RagA family. (1090 aa)    
Predicted Functional Partners:
GAT63063.1
Starch-binding associating with outer membrane.
     0.882
GAT63061.1
Calcineurin-like phosphoesterase.
 
     0.865
GAT62155.1
Starch-binding associating with outer membrane.
 
     0.744
GAT62227.1
SusD family protein.
  
 
   0.683
GAT61831.1
Starch-binding associating with outer membrane.
  
     0.679
GAT62207.1
Starch-binding associating with outer membrane.
  
 
   0.635
GAT61836.1
Starch-binding associating with outer membrane.
  
     0.596
GAT61833.1
Starch-binding associating with outer membrane.
  
     0.592
GAT62330.1
Starch-binding associating with outer membrane.
  
 
   0.581
GAT63306.1
Hypothetical protein.
  
     0.553
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.