STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT63229.1Signal transducer regulating beta-lactamase production. (491 aa)    
Predicted Functional Partners:
GAT63228.1
Predicted transcriptional regulator.
 
 
 0.976
GAT62439.1
Predicted transcriptional regulator.
 
 
 0.889
GAT64094.1
Hypothetical protein.
  
     0.585
GAT61737.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.564
GAT64178.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.555
GAT63457.1
Starch-binding associating with outer membrane.
  
     0.539
GAT61550.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.530
GAT62578.1
Hypothetical protein.
  
     0.517
GAT61973.1
Iron complex outermembrane recepter protein.
  
     0.509
GAT62042.1
TonB-dependent outer membrane receptor, SusC/RagA subfamily.
  
     0.507
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.