STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT63273.1RNA polymerase sigma-70 factor, ECF subfamily. (197 aa)    
Predicted Functional Partners:
GAT61617.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.772
PJIAN_171
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.762
GAT61694.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.748
GAT63984.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.747
GAT62610.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.737
GAT63272.1
Hypothetical protein.
       0.578
GAT62036.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.568
GAT64021.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.533
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.462
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.449
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.