STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT63287.15'-nucleotidase. (249 aa)    
Predicted Functional Partners:
GAT63286.1
5'-nucleotidase.
  
  0.989
GAT63104.1
IMP dehydrogenase.
    
 0.794
GAT63618.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
   
 
  0.768
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.766
GAT63029.1
Uridine kinase.
  
 
  0.748
GAT61798.1
Outer membrane protein assembly factor BamB.
   
 
 0.719
GAT62887.1
NADPH-dependent 2,4-dienoyl-CoA reductase.
    
 0.591
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
   
  0.586
GAT63288.1
Putative oligopeptide transporter, OPT family.
       0.547
GAT63289.1
PAS fold-containing protein.
       0.514
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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