STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT63405.1Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (323 aa)    
Predicted Functional Partners:
GAT63406.1
Endo-1,4-beta-xylanase.
 
     0.802
GAT63574.1
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
     0.661
GAT63449.1
Alpha-glucuronidase.
 
     0.656
GAT63407.1
Sugar Glycoside-Pentoside-Hexuronide transporter.
 
    0.632
GAT64321.1
Endo-1,4-beta-xylanase.
 
     0.581
GAT64299.1
F5/8 type C domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.540
GAT63433.1
Glycosyl hydrolase family 67 N-terminus.
 
     0.498
GAT63670.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.461
GAT63580.1
Glycosyl hydrolase family 67 N-terminus.
 
     0.450
GAT63430.1
Endo-1,4-beta-xylanase.
  
     0.447
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.