STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PJIAN_398Outer membrane protein insertion porin family. (881 aa)    
Predicted Functional Partners:
PJIAN_397
Outer membrane protein.
 
  
 0.920
GAT64204.1
Outer membrane protein assembly factor BamD.
 
 
 0.917
PJIAN_396
Outer membrane protein.
 
  
 0.858
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.792
PJIAN_328
Regulator of sigma E protease.
 
  
 0.791
GAT61606.1
Peptidyl-prolyl cis-trans isomerase SurA.
  
 
 0.774
GAT61895.1
Signal peptidase I.
 
  
 0.768
GAT61761.1
Hypothetical protein.
  
     0.763
GAT61916.1
Outer membrane protein assembly factor BamA.
  
     0.747
GAT62110.1
LPS assembly outer membrane protein LptD.
  
  
 0.745
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.