STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT63634.1L-rhamnose mutarotase. (117 aa)    
Predicted Functional Partners:
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
 
 0.854
GAT63632.1
alpha-L-fucosidase.
     0.622
GAT63633.1
alpha-L-fucosidase.
    0.614
PJIAN_148
Rhamnulokinase.
  
  
 0.572
GAT62575.1
Xylulokinase.
  
  
 0.562
PJIAN_242
MFS transporter, FHS family.
 
    0.543
GAT64290.1
MFS transporter, FHS family.
 
    0.522
GAT63111.1
MFS transporter, FHS family.
 
    0.520
GAT63635.1
Glycosyl hydrolase family 67 N-terminus.
       0.470
GAT61549.1
Starch-binding associating with outer membrane.
  
     0.458
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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