STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT63740.12-keto-4-pentenoate hydratase. (204 aa)    
Predicted Functional Partners:
GAT61821.1
D-lactate dehydrogenase.
  
 
 0.779
GAT62557.1
RHH-type transcriptional regulator; Belongs to the aldehyde dehydrogenase family.
 
 
 0.778
PJIAN_339
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.737
GAT63741.1
Peptidase family C25.
       0.636
GAT63718.1
2,4-dienoyl-CoA reductase.
    
 0.596
GAT63776.1
Succinate dehydrogenase.
  
 
 0.594
GAT63777.1
Succinate dehydrogenase.
  
 
  0.553
GAT63775.1
Succinate dehydrogenase.
    
  0.545
GAT62030.1
Heterodisulfide reductase subunit B.
   
 
  0.533
GAT63603.1
Lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  0.530
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.