STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PJIAN_435ABC-2 type transport system ATP-binding protein. (250 aa)    
Predicted Functional Partners:
PJIAN_436
ABC-2 type transport system permease protein.
 
  0.995
PJIAN_437
ABC-2 type transport system permease protein.
 
  0.995
PJIAN_433
HlyD family secretion protein.
 
    0.918
PJIAN_432
Outer membrane protein TolC.
 
     0.884
PJIAN_434
ABC-type multidrug transport system.
 
    
0.802
GAT63034.1
ABC-2 type transport system permease protein.
  
 
  0.785
PJIAN_431
DNA-binding transcriptional regulator, AcrR family.
 
     0.756
GAT61522.1
ABC-2 type transport system permease protein.
  
 0.721
GAT61789.1
ABC-type nitrate/sulfonate/bicarbonate transport system.
 
  
 
0.713
GAT63290.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.642
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.