STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT63840.1Carboxypeptidase regulatory-like domain-containing protein. (680 aa)    
Predicted Functional Partners:
GAT63839.1
Hypothetical protein.
 
     0.930
GAT63844.1
Hypothetical protein.
 
     0.785
GAT63841.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
     0.763
GAT63661.1
Xylan 1,4-beta-xylosidase.
  
  
  0.751
GAT63450.1
Fibronectin type III domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.742
GAT63842.1
Starch-binding associating with outer membrane.
 
     0.737
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
   
 
  0.587
GAT63843.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.572
GAT61998.1
Starch-binding associating with outer membrane.
  
     0.410
GAT64266.1
Outer membrane receptor proteins.
  
     0.410
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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