STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT63947.1Hypothetical protein. (248 aa)    
Predicted Functional Partners:
GAT63946.1
Hypothetical protein.
       0.792
GAT63945.1
Nitroreductase.
       0.773
GAT61910.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.752
GAT63948.1
KDO2-lipid IV(A) lauroyltransferase.
       0.737
GAT63949.1
Hypothetical protein.
       0.737
GAT61594.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.732
PJIAN_450
Acyl dehydratase.
 
   0.654
GAT62415.1
Hypothetical protein.
  
     0.603
GAT63944.1
Hypothetical protein.
       0.578
PJIAN_215
acetyl-CoA synthetase.
    
  0.547
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.