STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT64240.1Feruloyl esterase. (590 aa)    
Predicted Functional Partners:
GAT62557.1
RHH-type transcriptional regulator; Belongs to the aldehyde dehydrogenase family.
 
 
 0.835
GAT64158.1
NADH-quinone oxidoreductase subunit F.
   
 
 0.757
PJIAN_291
Hypothetical protein.
  
     0.753
GAT63345.1
Outer membrane receptor for ferrienterochelin and colicins.
  
     0.752
GAT64157.1
NADH-quinone oxidoreductase subunit E.
   
   0.726
GAT62184.1
AhpC/TSA family protein.
  
     0.725
GAT63444.1
Hypothetical protein; Belongs to the UPF0311 family.
  
     0.721
GAT62920.1
Tetratricopeptide repeat-containing protein.
  
     0.709
GAT61556.1
Hypothetical protein.
  
     0.706
nuoD
NADH-quinone oxidoreductase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
 
 0.675
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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