STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT64346.1Glycosyl transferase family 2. (266 aa)    
Predicted Functional Partners:
GAT64344.1
DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family.
  
    0.774
GAT64345.1
Nucleoid DNA-binding protein; Belongs to the bacterial histone-like protein family.
  
    0.774
rimO
Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.773
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.618
GAT64348.1
Hypothetical protein.
       0.586
GAT64342.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
       0.563
GAT62294.1
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase.
  
 0.451
GAT62295.1
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
  
 0.451
GAT61823.1
Poly-beta-1,6 N-acetyl-D-glucosamine synthase.
  
 
 0.429
Your Current Organism:
Paludibacter jiangxiensis
NCBI taxonomy Id: 681398
Other names: CGMCC 1.5150, JCM 17480, KCTC 5844, P. jiangxiensis, Paludibacter jiangxiensis Qiu et al. 2016, Porphyromonadaceae bacterium NM7, strain NM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.