Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADL10811.1 | ADL10812.1 | CpC231_1340 | CpC231_1341 | Hypothetical protein. | Galactose-1-phosphate uridylyltransferase. | 0.701 |
ADL10811.1 | amiB | CpC231_1340 | CpC231_1342 | Hypothetical protein. | Metal- dependentamidase/aminoacylase/carboxypeptidase. | 0.586 |
ADL10812.1 | ADL10811.1 | CpC231_1341 | CpC231_1340 | Galactose-1-phosphate uridylyltransferase. | Hypothetical protein. | 0.701 |
ADL10812.1 | amiB | CpC231_1341 | CpC231_1342 | Galactose-1-phosphate uridylyltransferase. | Metal- dependentamidase/aminoacylase/carboxypeptidase. | 0.667 |
amiB | ADL10811.1 | CpC231_1342 | CpC231_1340 | Metal- dependentamidase/aminoacylase/carboxypeptidase. | Hypothetical protein. | 0.586 |
amiB | ADL10812.1 | CpC231_1342 | CpC231_1341 | Metal- dependentamidase/aminoacylase/carboxypeptidase. | Galactose-1-phosphate uridylyltransferase. | 0.667 |
amiB | dapF | CpC231_1342 | CpC231_1238 | Metal- dependentamidase/aminoacylase/carboxypeptidase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.503 |
dapF | amiB | CpC231_1238 | CpC231_1342 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | Metal- dependentamidase/aminoacylase/carboxypeptidase. | 0.503 |