STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000974445_02610Unannotated protein. (935 aa)    
Predicted Functional Partners:
UK23_09725
Unannotated protein; Belongs to the glycosyl hydrolase 43 family.
    
0.910
UK23_32470
Unannotated protein.
  
 0.839
UK23_09750
Unannotated protein.
 
     0.785
UK23_09745
Unannotated protein.
 
     0.704
GCA_000974445_06499
Unannotated protein.
 
 
 0.694
UK23_09740
Unannotated protein.
 
     0.674
UK23_11305
Unannotated protein.
  
 
 0.670
GCA_000974445_09036
Unannotated protein.
  
 
 0.670
UK23_09735
Unannotated protein.
 
     0.648
UK23_09755
Unannotated protein.
 
   
 0.642
Your Current Organism:
Lentzea aerocolonigenes
NCBI taxonomy Id: 68170
Other names: ATCC 23870, BCRC 13661, CCRC 13661, CCRC:13661, CIP 107109, DSM 40034, IFO 13195, ISP 5034, JCM 4150, JCM 4614, L. aerocolonigenes, Lechevalieria aerocolonigenes, NBRC 13195, NRRL B-3298, NRRL ISP-5034, Nocardia aerocolonigenes, Saccharothrix aerocolonigenes, Streptomyces aerocolonigenes, strain Shinobu N 701
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.