STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UK23_07855Unannotated protein. (1007 aa)    
Predicted Functional Partners:
UK23_07850
Unannotated protein.
 
  
 0.998
UK23_07845
Unannotated protein.
  
 0.996
GCA_000974445_04644
Unannotated protein.
 
  
 0.994
GCA_000974445_04642
Unannotated protein.
 
 
0.983
UK23_17910
Unannotated protein.
  
 0.983
UK23_17900
Unannotated protein.
 
 
0.982
GCA_000974445_07110
Unannotated protein.
  
  
 0.956
UK23_07860
Unannotated protein.
       0.813
UK23_15105
Unannotated protein.
 
 
 
0.693
UK23_37055
Unannotated protein.
 
 
 
0.666
Your Current Organism:
Lentzea aerocolonigenes
NCBI taxonomy Id: 68170
Other names: ATCC 23870, BCRC 13661, CCRC 13661, CCRC:13661, CIP 107109, DSM 40034, IFO 13195, ISP 5034, JCM 4150, JCM 4614, L. aerocolonigenes, Lechevalieria aerocolonigenes, NBRC 13195, NRRL B-3298, NRRL ISP-5034, Nocardia aerocolonigenes, Saccharothrix aerocolonigenes, Streptomyces aerocolonigenes, strain Shinobu N 701
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.