STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002028425_00167Unannotated protein. (288 aa)    
Predicted Functional Partners:
VR44_14610
Unannotated protein; Belongs to the peptidase S8 family.
  
 0.811
VR44_23990
Unannotated protein.
    
   0.611
VR44_37600
Unannotated protein.
  
     0.589
GCA_002028425_06464
Unannotated protein.
    
 0.571
GCA_002028425_04574
Unannotated protein.
  
     0.564
VR44_02925
Unannotated protein.
  
 
   0.463
GCA_002028425_05893
Unannotated protein.
  
     0.457
VR44_27155
Unannotated protein.
    
  0.446
VR44_11695
Unannotated protein.
  
 
   0.425
VR44_07545
Unannotated protein; Degrades oligopeptides; Belongs to the peptidase S41B family.
   
   0.411
Your Current Organism:
Streptomyces katrae
NCBI taxonomy Id: 68223
Other names: ATCC 27440, CBS 748.72, DSM 40550, IFO 13447, IMET 43361, ISP 5550, JCM 4777, NBRC 13447, NRRL B-3093, NRRL-ISP 5550, RIA 794, S. katrae, Streptomyces katrensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.