STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VR44_25695Unannotated protein. (300 aa)    
Predicted Functional Partners:
VR44_25690
Unannotated protein.
 
 
 0.968
VR44_25700
Unannotated protein.
 
    0.893
VR44_29790
Unannotated protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.828
VR44_29785
Unannotated protein.
  
 
 0.823
VR44_20485
Unannotated protein.
  
 
  0.652
VR44_29775
Unannotated protein.
    
  0.600
VR44_29765
Unannotated protein.
       0.570
VR44_04300
Unannotated protein.
 
    0.560
VR44_13360
Unannotated protein.
 
  
  0.557
glmS-2
Unannotated protein; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
 
0.555
Your Current Organism:
Streptomyces katrae
NCBI taxonomy Id: 68223
Other names: ATCC 27440, CBS 748.72, DSM 40550, IFO 13447, IMET 43361, ISP 5550, JCM 4777, NBRC 13447, NRRL B-3093, NRRL-ISP 5550, RIA 794, S. katrae, Streptomyces katrensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.