Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_002028425_05478 | VR44_23380 | GCA_002028425_05478 | GCA_002028425_02022 | Unannotated protein. | Unannotated protein. | 0.891 |
GCA_002028425_05478 | VR44_23390 | GCA_002028425_05478 | GCA_002028425_02020 | Unannotated protein. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. | 0.974 |
GCA_002028425_05478 | VR44_23405 | GCA_002028425_05478 | GCA_002028425_02017 | Unannotated protein. | Unannotated protein; Belongs to the SEDS family. | 0.973 |
GCA_002028425_05478 | ftsQ | GCA_002028425_05478 | GCA_002028425_02015 | Unannotated protein. | Unannotated protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.935 |
GCA_002028425_05478 | mraY | GCA_002028425_05478 | GCA_002028425_02019 | Unannotated protein. | Unannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.937 |
GCA_002028425_05478 | murD | GCA_002028425_05478 | GCA_002028425_02018 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.998 |
GCA_002028425_05478 | murE | GCA_002028425_05478 | GCA_002028425_02021 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.982 |
GCA_002028425_05478 | murG | GCA_002028425_05478 | GCA_002028425_02016 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.981 |
GCA_002028425_05478 | murG-2 | GCA_002028425_05478 | GCA_002028425_06330 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.945 |
VR44_23380 | GCA_002028425_05478 | GCA_002028425_02022 | GCA_002028425_05478 | Unannotated protein. | Unannotated protein. | 0.891 |
VR44_23380 | VR44_23390 | GCA_002028425_02022 | GCA_002028425_02020 | Unannotated protein. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. | 0.969 |
VR44_23380 | VR44_23405 | GCA_002028425_02022 | GCA_002028425_02017 | Unannotated protein. | Unannotated protein; Belongs to the SEDS family. | 0.979 |
VR44_23380 | ftsQ | GCA_002028425_02022 | GCA_002028425_02015 | Unannotated protein. | Unannotated protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.986 |
VR44_23380 | mraY | GCA_002028425_02022 | GCA_002028425_02019 | Unannotated protein. | Unannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.950 |
VR44_23380 | murD | GCA_002028425_02022 | GCA_002028425_02018 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.955 |
VR44_23380 | murE | GCA_002028425_02022 | GCA_002028425_02021 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.977 |
VR44_23380 | murG | GCA_002028425_02022 | GCA_002028425_02016 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.941 |
VR44_23380 | murG-2 | GCA_002028425_02022 | GCA_002028425_06330 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.681 |
VR44_23390 | GCA_002028425_05478 | GCA_002028425_02020 | GCA_002028425_05478 | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. | Unannotated protein. | 0.974 |
VR44_23390 | VR44_23380 | GCA_002028425_02020 | GCA_002028425_02022 | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. | Unannotated protein. | 0.969 |
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