STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002028425_03569Unannotated protein. (113 aa)    
Predicted Functional Partners:
VR44_00895
Unannotated protein.
 0.994
VR44_34995
Unannotated protein.
 
 0.950
VR44_05290
Unannotated protein.
 
 0.950
VR44_12420
Unannotated protein.
 
 0.906
VR44_23115
Unannotated protein.
  
 0.774
VR44_00910
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.768
GCA_002028425_05576
Unannotated protein.
  
 0.767
VR44_24345
Unannotated protein.
   
 
 0.763
VR44_00900
Unannotated protein.
  
    0.729
VR44_19605
Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
 0.720
Your Current Organism:
Streptomyces katrae
NCBI taxonomy Id: 68223
Other names: ATCC 27440, CBS 748.72, DSM 40550, IFO 13447, IMET 43361, ISP 5550, JCM 4777, NBRC 13447, NRRL B-3093, NRRL-ISP 5550, RIA 794, S. katrae, Streptomyces katrensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.