STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002028425_04975Unannotated protein. (307 aa)    
Predicted Functional Partners:
VR44_04660
Unannotated protein.
 
 0.911
GCA_002028425_05703
Unannotated protein.
 
 0.870
VR44_04765
Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 0.870
VR44_04690
Unannotated protein.
 
 0.867
GCA_002028425_06981
Unannotated protein.
  
 0.844
GCA_002028425_06982
Unannotated protein.
 
 0.808
VR44_16435
Unannotated protein.
  
 0.803
VR44_23635
Unannotated protein.
 
 0.795
GCA_002028425_00451
Unannotated protein.
  
 0.771
VR44_26300
Unannotated protein.
  
0.767
Your Current Organism:
Streptomyces katrae
NCBI taxonomy Id: 68223
Other names: ATCC 27440, CBS 748.72, DSM 40550, IFO 13447, IMET 43361, ISP 5550, JCM 4777, NBRC 13447, NRRL B-3093, NRRL-ISP 5550, RIA 794, S. katrae, Streptomyces katrensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.