STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002028425_05401Unannotated protein. (371 aa)    
Predicted Functional Partners:
GCA_002028425_05403
Unannotated protein.
 0.996
VR44_01525
Unannotated protein; Belongs to the DapA family.
 
  
 0.992
GCA_002028425_04961
Unannotated protein.
 
 0.973
VR44_01515
Unannotated protein.
 
 
  0.962
VR44_01530
Unannotated protein; Belongs to the proline racemase family.
 
  
 0.943
GCA_002028425_01260
Unannotated protein.
   
 
 0.898
VR44_24345
Unannotated protein.
  
 
 0.883
kbl
Unannotated protein; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
    
 0.876
VR44_26640
Unannotated protein.
     
 0.875
VR44_01535
Unannotated protein; Belongs to the proline racemase family.
 
  
 0.872
Your Current Organism:
Streptomyces katrae
NCBI taxonomy Id: 68223
Other names: ATCC 27440, CBS 748.72, DSM 40550, IFO 13447, IMET 43361, ISP 5550, JCM 4777, NBRC 13447, NRRL B-3093, NRRL-ISP 5550, RIA 794, S. katrae, Streptomyces katrensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.