STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002028425_06718Unannotated protein. (234 aa)    
Predicted Functional Partners:
VR44_01025
Unannotated protein; Belongs to the globin family.
  
  
 0.944
VR44_12720
Unannotated protein; Belongs to the globin family.
  
  
 0.874
GCA_002028425_06717
Unannotated protein.
       0.791
GCA_002028425_06716
Unannotated protein.
       0.773
VR44_15180
Unannotated protein.
 
     0.758
VR44_33955
Unannotated protein.
  
  
 0.524
VR44_00665
Unannotated protein.
  
  
 0.524
GCA_002028425_06715
Unannotated protein.
       0.418
Your Current Organism:
Streptomyces katrae
NCBI taxonomy Id: 68223
Other names: ATCC 27440, CBS 748.72, DSM 40550, IFO 13447, IMET 43361, ISP 5550, JCM 4777, NBRC 13447, NRRL B-3093, NRRL-ISP 5550, RIA 794, S. katrae, Streptomyces katrensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.