Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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Databases
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[Homology]
Score
KUN36559.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)    
Predicted Functional Partners:
KUN41170.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
KUN36560.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
       0.712
KUN37622.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
KUN36561.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.678
KUN36562.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.652
KUN36747.1
Bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.549
KUN36556.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.549
KUN36558.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.530
KUN36564.1
Integration host factor; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.510
KUN39962.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
Your Current Organism:
Streptomyces longwoodensis
NCBI taxonomy Id: 68231
Other names: ATCC 29251, BCRC 12034, CCRC 12034, CCRC:12034, DSM 41677, IFO 14251, JCM 4976, KCTC 9783, LMG 20096, LMG:20096, NBRC 14251, NRRL B-16923, S. longwoodensis, strain Roche X-14537
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