STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE2Unannotated protein. (86 aa)    
Predicted Functional Partners:
rplU
Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.993
rpsT
Unannotated protein; Binds directly to 16S ribosomal RNA.
  
 
 0.993
rpsP
Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.993
rpsD
Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.992
rplT
Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.992
rpmA
Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.992
rplM
Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.992
rplA
Unannotated protein; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
   
 
 0.992
rpmF
Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.992
rpsO
Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.992
Your Current Organism:
Streptomyces mirabilis
NCBI taxonomy Id: 68239
Other names: ATCC 27447, Actinomyces mirabilis, CBS 751.72, DSM 40553, IFO 13450, ISP 5553, JCM 4551, JCM 4791, NBRC 13450, NRRL B-2400, NRRL-ISP 5553, S. mirabilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.