Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000745715_04410 | GCA_000745715_04588 | GCA_000745715_04410 | GCA_000745715_04588 | Unannotated protein; Belongs to the helicase family. UvrD subfamily. | Unannotated protein. | 0.411 |
GCA_000745715_04410 | GCA_000745715_09045 | GCA_000745715_04410 | GCA_000745715_09045 | Unannotated protein; Belongs to the helicase family. UvrD subfamily. | Unannotated protein. | 0.877 |
GCA_000745715_04410 | disA | GCA_000745715_04410 | GCA_000745715_02516 | Unannotated protein; Belongs to the helicase family. UvrD subfamily. | Unannotated protein; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation; upon encountering a lesion, the DisA focus arrests at the damaged site and halts c-di-AMP synthesis. | 0.829 |
GCA_000745715_04410 | recA | GCA_000745715_04410 | GCA_000745715_05218 | Unannotated protein; Belongs to the helicase family. UvrD subfamily. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.927 |
GCA_000745715_04588 | GCA_000745715_04410 | GCA_000745715_04588 | GCA_000745715_04410 | Unannotated protein. | Unannotated protein; Belongs to the helicase family. UvrD subfamily. | 0.411 |
GCA_000745715_04588 | GCA_000745715_04654 | GCA_000745715_04588 | GCA_000745715_04654 | Unannotated protein. | Unannotated protein. | 0.769 |
GCA_000745715_04588 | GCA_000745715_09045 | GCA_000745715_04588 | GCA_000745715_09045 | Unannotated protein. | Unannotated protein. | 0.652 |
GCA_000745715_04654 | GCA_000745715_04588 | GCA_000745715_04654 | GCA_000745715_04588 | Unannotated protein. | Unannotated protein. | 0.769 |
GCA_000745715_04654 | GCA_000745715_09045 | GCA_000745715_04654 | GCA_000745715_09045 | Unannotated protein. | Unannotated protein. | 0.687 |
GCA_000745715_07541 | GCA_000745715_09045 | GCA_000745715_07541 | GCA_000745715_09045 | Unannotated protein. | Unannotated protein. | 0.682 |
GCA_000745715_09044 | GCA_000745715_09045 | GCA_000745715_09044 | GCA_000745715_09045 | Unannotated protein. | Unannotated protein. | 0.698 |
GCA_000745715_09044 | GCA_000745715_09046 | GCA_000745715_09044 | GCA_000745715_09046 | Unannotated protein. | Unannotated protein. | 0.623 |
GCA_000745715_09045 | GCA_000745715_04410 | GCA_000745715_09045 | GCA_000745715_04410 | Unannotated protein. | Unannotated protein; Belongs to the helicase family. UvrD subfamily. | 0.877 |
GCA_000745715_09045 | GCA_000745715_04588 | GCA_000745715_09045 | GCA_000745715_04588 | Unannotated protein. | Unannotated protein. | 0.652 |
GCA_000745715_09045 | GCA_000745715_04654 | GCA_000745715_09045 | GCA_000745715_04654 | Unannotated protein. | Unannotated protein. | 0.687 |
GCA_000745715_09045 | GCA_000745715_07541 | GCA_000745715_09045 | GCA_000745715_07541 | Unannotated protein. | Unannotated protein. | 0.682 |
GCA_000745715_09045 | GCA_000745715_09044 | GCA_000745715_09045 | GCA_000745715_09044 | Unannotated protein. | Unannotated protein. | 0.698 |
GCA_000745715_09045 | GCA_000745715_09046 | GCA_000745715_09045 | GCA_000745715_09046 | Unannotated protein. | Unannotated protein. | 0.778 |
GCA_000745715_09045 | disA | GCA_000745715_09045 | GCA_000745715_02516 | Unannotated protein. | Unannotated protein; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation; upon encountering a lesion, the DisA focus arrests at the damaged site and halts c-di-AMP synthesis. | 0.899 |
GCA_000745715_09045 | recA | GCA_000745715_09045 | GCA_000745715_05218 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.882 |
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