STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOW90748.1Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)    
Predicted Functional Partners:
BC342_34190
ABC transporter permease; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.986
AOW86066.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.882
AOW87639.1
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
 0.875
AOW86065.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.860
AOW90746.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.754
AOW90023.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.725
AOW90702.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.718
AOW90745.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.715
AOW91469.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
AOW87144.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.692
Your Current Organism:
Streptomyces pactum
NCBI taxonomy Id: 68249
Other names: ATCC 27456, BCRC 12076, CBS 461.69, CBS 734.72, CCRC 12076, CCRC:12076, DSM 40530, IFO 13433, IMET 43357, ISP 5530, JCM 4288, JCM 4809, KCTC 9165, LMG 19357, LMG:19357, NBRC 13433, NCIMB 9445, NRRL 2939, NRRL ISP-5530, NRRL-ISP 5530, S. pactum, Streptomyces pactum var. pactum, Streptomyces pactus
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.