Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A4R28_07675 | A4R28_28010 | GCA_000474725_03726 | GCA_000474725_06820 | Unannotated protein. | Unannotated protein. | 0.770 |
A4R28_07675 | A4R28_28380 | GCA_000474725_03726 | GCA_000474725_06745 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.999 |
A4R28_07675 | ligA | GCA_000474725_03726 | GCA_000474725_03091 | Unannotated protein. | Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.627 |
A4R28_07675 | polA | GCA_000474725_03726 | GCA_000474725_00811 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.988 |
A4R28_28010 | A4R28_07675 | GCA_000474725_06820 | GCA_000474725_03726 | Unannotated protein. | Unannotated protein. | 0.770 |
A4R28_28010 | A4R28_28015 | GCA_000474725_06820 | GCA_000474725_06819 | Unannotated protein. | Unannotated protein. | 0.983 |
A4R28_28010 | A4R28_28380 | GCA_000474725_06820 | GCA_000474725_06745 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.939 |
A4R28_28010 | A4R28_28495 | GCA_000474725_06820 | GCA_000474725_06720 | Unannotated protein. | Unannotated protein. | 0.806 |
A4R28_28010 | A4R28_28500 | GCA_000474725_06820 | GCA_000474725_06719 | Unannotated protein. | Unannotated protein. | 0.834 |
A4R28_28010 | GCA_000474725_01001 | GCA_000474725_06820 | GCA_000474725_01001 | Unannotated protein. | Unannotated protein. | 0.856 |
A4R28_28010 | GCA_000474725_02246 | GCA_000474725_06820 | GCA_000474725_02246 | Unannotated protein. | Unannotated protein. | 0.773 |
A4R28_28010 | ligA | GCA_000474725_06820 | GCA_000474725_03091 | Unannotated protein. | Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.898 |
A4R28_28010 | mutS | GCA_000474725_06820 | GCA_000474725_00430 | Unannotated protein. | Unannotated protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.783 |
A4R28_28010 | polA | GCA_000474725_06820 | GCA_000474725_00811 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.941 |
A4R28_28015 | A4R28_28010 | GCA_000474725_06819 | GCA_000474725_06820 | Unannotated protein. | Unannotated protein. | 0.983 |
A4R28_28015 | A4R28_28380 | GCA_000474725_06819 | GCA_000474725_06745 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.414 |
A4R28_28015 | A4R28_28495 | GCA_000474725_06819 | GCA_000474725_06720 | Unannotated protein. | Unannotated protein. | 0.809 |
A4R28_28015 | A4R28_28500 | GCA_000474725_06819 | GCA_000474725_06719 | Unannotated protein. | Unannotated protein. | 0.801 |
A4R28_28015 | GCA_000474725_01001 | GCA_000474725_06819 | GCA_000474725_01001 | Unannotated protein. | Unannotated protein. | 0.860 |
A4R28_28015 | ligA | GCA_000474725_06819 | GCA_000474725_03091 | Unannotated protein. | Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.557 |
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