STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC33455.1Hypothetical protein; C414_000010040 identified by Glimmer3 with a raw score of 15.45. Gene function extrapolated from JJD26997_2086 (CP000768.1) after blastn alignment (92.81 percent identity over a 473 bp alignment) - for clarity, the original product name 'conserved hypothetical protein' has been renamed. (178 aa)    
Predicted Functional Partners:
rpmC
50S ribosomal protein L29; C414_000010054 identified by Glimmer3 with a raw score of 9.42. Gene function extrapolated from C8J_1603 (CP000814.1) after blastn alignment (98.39 percent identity over a 186 bp alignment); Belongs to the universal ribosomal protein uL29 family.
 
     0.788
EFC32670.1
Hypothetical protein; C414_000230016 identified by Glimmer3 with a raw score of 13.24. Gene function extrapolated from JJD26997_0824 (CP000768.1) after blastn alignment (96.36 percent identity over a 110 bp alignment) - for clarity, the original product name 'conserved hypothetical protein' has been renamed.
  
    0.780
EFC31963.1
Hypothetical protein; Features C414_000440016, C414_000440017 joined to form C414_000440063 to correct 454 sequencing error (C414_000440016 identified by Glimmer3 with a raw score of 15.53, C414_000440017 identified by Glimmer3 with a raw score of 12.07). Gene function extrapolated from CJJ81176_0149 (CP000538.1) after blastn alignment (99.00 percent identity over a 100 bp alignment) - for clarity, the original product name 'conserved hypothetical protein' has been renamed.
 
    0.779
EFC31993.1
Hypothetical protein; C414_000440048 identified by Glimmer3 with a raw score of 13.79. Gene function extrapolated from C8J_0126 (CP000814.1) after blastn alignment (93.28 percent identity over a 402 bp alignment).
  
    0.777
EFC32732.1
Transformation system protein; C414_000230080 identified by Glimmer3 with a raw score of 10.80. Gene function extrapolated from CJJ81176_1047 (CP000538.1) after blastn alignment (90.87 percent identity over a 449 bp alignment).
  
     0.774
atpF
ATP synthase F0 sector B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.774
EFC33398.1
Hypothetical protein; C414_000020061 identified by Glimmer3 with a raw score of 15.21. Gene function extrapolated from CJJ81176_1487 (CP000538.1) after blastn alignment (94.34 percent identity over a 530 bp alignment) - for clarity, the original product name 'conserved hypothetical protein' has been renamed.
  
     0.772
rlmN
Putative radical SAM domain protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
     
 0.769
EFC32809.1
Hypothetical protein; C414_000220064 identified by Glimmer3 with a raw score of 11.99. Gene function extrapolated from C8J_0819 (CP000814.1) after blastn alignment (93.51 percent identity over a 1047 bp alignment).
  
     0.765
EFC32714.1
trkA domain protein; C414_000230060 identified by Glimmer3 with a raw score of 11.77. Gene function extrapolated from CJJ81176_1027 (CP000538.1) after blastn alignment (95.12 percent identity over a 410 bp alignment).
  
     0.764
Your Current Organism:
Campylobacter jejuni 414
NCBI taxonomy Id: 683083
Other names: C. jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni str. 414, Campylobacter jejuni subsp. jejuni strain 414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.